Looks to me like you didn't add the bot object files into zone/makefile.common that are needed for -EQBOTS to work. This patch will do it for you.
Code:
diff -up EQEmuServer/zone/makefile.common.dan EQEmuServer/zone/makefile.common
--- EQEmuServer/zone/makefile.common.dan 2009-06-11 17:43:20.000000000 -0700
+++ EQEmuServer/zone/makefile.common 2009-06-11 17:44:08.000000000 -0700
@@ -31,7 +31,7 @@ SF= .obj/EQPacket.o .obj/EQStream.o .obj
../common/EQStreamIdent.o ../common/patches/Live.o \
zone_logsys.o ../common/BasePacket.o ../common/worldconn.o \
../common/EmuTCPConnection.o ../common/EmuTCPServer.o ../common/TCPServer.o \
- ../common/guild_base.o guild_mgr.o tasks.o raids.o
+ ../common/guild_base.o guild_mgr.o tasks.o raids.o botAI.o botRaids.o petAI.o
all: $(APP)
Let me know if this resolves the problem or if you have other problems after this change.