Make sure you completely rebuilt after switching to bots as well. Try 'make clean' then 'make' to force everything to be rebuilt.
I haven't really looked at it, but KLS mentioned that part of the source is built into a library. If that library didn't get rebuilt and any of the rule stuff is in it then maybe there's an issue with the rule arrays and the data is being read from the wrong place. Long shot, but worth a try.
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