Both that guide and the linux one on the wiki make references to database versioning that no longer exists, and is adding confusion.
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As of the time of writing, the EQEmu source is at Revision 2501, so we need to source in any SQL updates with a number between 2295 and 2501 (there are 14 of them).
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That is the problem, the db is not 2501, it is now date based.
Sounds like you sourced in unneeded sqls.
I need to run but if your issue is not solved I will try to help you later. But it looks like the daily db stopped at 8-11-2014, if so, then should just need two required sqls sourced in after that, dated 8-12 and 8-18-2014 in the /utils/sql/git directory. Assuming your source is built on 8-18-2014 or later.
So drop_system, source peqbeta, source those 2 sqls, should be set.