I have never seen any hard coded paths in the source as far as I can recall. Other people would be having issues if that was the case.
More likely, something went wrong when you ran CMAKE and one of the paths got set incorrectly there somehow.
*EDIT* From some google searches on those lines, it looks like they are related to some CRT stuff not specific to EQEmu. I don't really know what it is for or why it shows up in the crash logs. May depend on the version of VS you are building your source with and the settings you are using for the build.
https://vld.codeplex.com/workitem/10446
What Operating System are you on and what version of VS are you using?