Are those are 2 separate PCs? You can't run more than 1 EQEmu server on a LAN at a time, or at least not without doing some funky networking stuff. Your port 9000 has to be forwarded from your router to your linux server for it to work. My guess is that you had it opened to your windows server and will need to point that to your Linux server instead now for it to work. If you set a DMZ to your windows box, that also would cause this issue.
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