You can manually run the queries found here:
https://github.com/EQEmu/Server/tree.../bots/required
(You should have them locally in your source code folder..just match up the paths.)
They should be installed in the order listed in the manifest - starting with 9000:
https://github.com/EQEmu/Server/blob...e_manifest.txt
There are a couple of other changes that need to be applied as well..but, until you get all of those in, without errors, we won't address that.