The syntax of the scripts was something like perl script.pl -d dbname -u user -p pass -h host. They have a couple of dependencies for MySQL support which you can grab from ppm the same way you got IO::Scalar if you don't already have them. The item update sql needed to be run before the perl scripts. If you get an error for every item, then your db is not up to date.
Some more ideas popped in my head... make sure db.ini has no white space, and try to stop then re-start the MySQL service. I remember that fixed me up a long while back.
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