Emu and Live on same comp.

[cjrxthree]

So I've talked to numerous people.
They've known other people to run into this problem and fix it, but they don't know how to themselves.

Problem:
I have an install of Titanium for EMU.
I have an install of Anniversary for Live.

Program files>Sony>Everquest=Live.
Program files>Sony>EverquestT=Emu.

I do everything.
Change host, and create shortcut with patchme. (all from EverquestT)
And i can play Emu etc.
but when I go back to play live.
All my files from Everquest folder are missing and into the EverquestT folder.
thus making me patch to live (for every expansion above titanium.) and no longer allowing me to play Emu without re-installing titanium.

Anyway to fix this? So I can switch between Live and Emu as I please.