Trevius, you're correct that if the tables don't add up to 100% there will be trouble converting, though realistically counting errors of a few percent can probably be disregarded off the bat. They won't make much of a difference, and were probably created by a deleted item or a mistake on a single entry anyway.
But for custom setups like yours, you already figured out the solution. You'll basically be doing half of what the code was doing anyway, since in the end the total probability had to equal 100% from a mathematical standpoint. You'll just need to add the extra step of simplifying the chances down to their root percentage.
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