I used to have problems like that with Cedega. I have Mandriva 2009 with an NVidia GForce 6100 card - I have Resolution at 1024x768 with desktop and eq client set to 16 million colors.
In my hardware setting for the "Graphic Card options", I had to enable Translucency, Use Hardware accelerated mouse pointer, Enable RENDER acceleration. (wasn't like that by default). I don't know if that helps the game, but you might want to try it out.
EDIT I can get everything to work on mine (all pixel shader versions, lighting, etc.)
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