Smaller tables that aren't used much generally benefit more from MyISAM over InnoDB. However, it wouldn't hurt to convert everything over. The only table I would highly recommend you leave MyISAM is character_backup. I'm not sure about you, but TGC's table is huge. Converting to InnoDB would waste so much space it's silly, and for that table you wouldn't really see much peformance boost at all, if any.
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