Regarding removing all the duplicated spawns, this depends on how you define a duplicated spawn. If you define a duplicated spawn as any that spawn within close vicinity of another then it won't (this is possible but probably not desirable). It only removes spawns that have the same name and spawn in the same zone at exactly the same location.
That query will probably run as is, you will have to test it (i am not very familiar with how MYSQL will handle this, my experience is really limited to Oracle and MSSQL DBMS's). I may even be wrong about the '00' NPC's altogether, i hav'nt really looked that closely, so you should check this first (also including the underscore was misinformation, just use '00').
Check the help that comes with MySQL or the tool you are using to find out how to dump query output to a file (I have been payed out for giving half-assed support in the past, so i will leave it to the offical helpers to give you the low down).
The world building team had asked that we (me?) hold off on posting these types of mods, personally I would just wait for the next DB release. Good luck anyway.
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