What exactly are you trying to accomplish? Basically, you need to download EQW 2.21 from EQHackers.com and use that to connect to the EQEmu Servers. Reason being, if you use EverQuest.exe, it will repatch every single time and reupdate the files you have to change in order to connect to the EQEmu. Make sense?
Are you triyng to run your own servers by using Boot5Zones or what? Your post is confusing. Read the several readme's included and then repost.
Leggo